Environmental gradients of Nypa fruticans productivity and benthic macrofaunal assemblages in an acidic peat coastal ecosystem, Eastern Sumatra, Indonesia
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Abstract. Syafina HAZ, Hartoko A, Purnomo PW. 2025. Environmental gradients of Nypa fruticans productivity and benthic macrofaunal assemblages in an acidic peat coastal ecosystem, Eastern Sumatra, Indonesia. Biodiversitas 26: 6212-6223. Nypa fruticans is a significant palm species found along tropical peat-fringed coasts; however, there is limited understanding of how its productivity and benthic fauna respond to hydrochemical gradients in acidic peat systems in this region. This study aimed to quantify the relationships of salinity and soil pH with N. fruticans aboveground biomass (AGB), carbon stocks, leaf chlorophyll, and benthic macrofauna along an estuarine–coastal gradient on an acidic peat coast in eastern Sumatra, Indonesia. We hypothesised that Nypa productivity and benthic richness and diversity would be highest in low-salinity, acidic estuarine plots and would decline towards saline, near-neutral coastal plots. We established 30 independent 10 × 10 m plots (10 per zone: estuarine, transitional, and coastal) and measured AGB (dry mass), carbon (C = 0.5 × AGB), leaf chlorophyll content, salinity, and soil pH. Benthic macrofauna were sampled using three 25 × 25 cm quadrats per plot, and diversity indices were calculated from quadrat and plot-level abundances. Differences among zones and their associations with environmental variables were assessed using ANOVA, non-parametric tests, correlation analysis, and PCA. AGB decreased from 45.9 ± 4.2 t ha-¹ in the estuarine zone to 3.1 ± 1.7 t ha-¹ and 1.1 ± 0.5 t ha-¹ in the transitional and coastal zones (F₂,₂₇ = 41.52, p < 0.001), with proportional reductions in the carbon stocks. Chlorophyll content was correlated with AGB (r = 0.84, p < 0.001), supporting its use as a measure of vigour. Benthic diversity (Shannon H′) declined from 1.450 in estuarine plots to 1.073 in coastal plots, and total benthic abundance decreased seaward, parallel to the declining Nypa productivity. Over this gradient, salinity increased from 0-1.4‰ to 9-10‰, and soil pH shifted from acidic (~2.35) to near-neutral (~7.0). Biotic variables were negatively associated with the salinity–pH axis in the PCA, indicating that hydrochemical gradients jointly structured the vegetation and benthos. This first gradient-based study of Indonesia’s acidic peat coasts quantifies Nypa productivity and benthic macrofauna along a salinity–pH gradient, providing a baseline for future multi-season investigations.
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References
Abidin Z, Setiawan B, Muhaimin AW, Shinta A. 2021. The role of coastal biodiversity conservation on sustainability and environmental awareness in mangrove ecosystem of southern Malang, Indonesia. Biodiversitas 22 (2): 648-658. DOI: 10.13057/biodiv/d220217.
Adame MF, Kelleway J, Krauss KW, Lovelock CE, Adams JB, Trevathan-Tackett SM, Noe G, Jeffrey L, Ronan M, Zann M, Carnell PE, Iram N, Maher DT, Murdiyarso D, Sasmito S, Tran DB, Dargusch P, Kauffman JB, Brophy L. 2024. All tidal wetlands are blue carbon ecosystems. Bioscience 74 (4): 253-268. DOI: 10.1093/biosci/biae007.
Afonso F, Felix PM, Chainho P, Heumüller JA, De Lima RF, Ribeiro F, Brito AC. 2021. Assessing ecosystem services in mangroves: Insights from São Tomé Island (Central Africa). Front Environ Sci 9: 501673. DOI: 10.3389/fenvs.2021.501673.
Alongi DM. 2020. Global significance of mangrove blue carbon in climate change mitigation. Sci 2 (3): 67. DOI: 10.3390/sci2030067.
Arifanti VB, Sidik F, Mulyanto B, Susilowati A, Wahyuni T, Subarno, Yuniarti N, Yuniarti N, Aminah A, Suita E, Karlina E, Suharti S, Pratiwi, Turjaman M, Hidayat A, Rachmat HH, Imanuddin R, Yeny I, Darwiati W, Sari N, Hakim SS, Slamet WY, Novita N. 2022. Challenges and strategies for sustainable mangrove management in Indonesia: A review. Forests 13: 695. DOI: 10.3390/f13050695.
Arnon DI. 1949. Copper enzymes in isolated chloroplasts. Polyphenoloxidase in Beta vulgaris. Plant Physiol 24 (1): 1-15. DOI: 10.1104/pp.24.1.1.
Basyuni M, Sulistiyono N, Ginting TT et al. 2022. Mangrove biodiversity, conservation and roles for livelihoods in Indonesia. In: Pullaiah DSC, Ashton EC (eds). Mangroves: Biodiversity, Livelihoods and Conservation. Springer, Singapore, DOI: 10.1007/978-981-19-0519-3_16.
Broman E, Izabel-Shen D, Rodríguez-Gijón A, Bonaglia S, Garcia SL, Nascimento FJA. 2022. Microbial functional genes are driven by gradients in sediment stoichiometry, oxygen, and salinity across the Baltic benthic ecosystem. Microbiome 10 (1): 126. DOI: 10.1186/s40168‑022‑01321‑z.
Brown S. 1997. Estimating Biomass and Biomass Change of Tropical Forests: A Primer. FAO Forestry Paper 134. Food and Agriculture Organization of the United Nations, Rome.
Cannicci S, Lee SY, Bravo H, Cantera-Kintz JR, Dahdouh-Guebas F, Fratini S, Fusi M, Jimenez PJ, Nordhaus I, Porri F, Diele K. 2021. A functional analysis reveals extremely low redundancy in global mangrove invertebrate fauna. Proc Natl Acad Sci U S A 118 (32): e2016913118. DOI: 10.1073/pnas.2016913118.
Carpenter KE, Niem VH. 1998. FAO Species Identification Guide for Fishery Purposes: The Living Marine Resources of the Western Central Pacific. Volume 1. Seaweeds, Corals, Bivalves and Gastropods. Food and Agriculture Organization of the United Nations, Rome.
Coppock RL, Lindeque PK, Cole M, Galloway TS, Näkki P, Birgani H, Richards S, Queirós AM. 2021. Benthic fauna contribute to microplastic sequestration in coastal sediments. J Hazard Mater 415: 125583. DOI: 10.1016/j.jhazmat.2021.125583.
Custodio M, Peñaloza R, Chanamé F, Yaranga R, Pantoja R. 2018. Assessment of the aquatic environment quality of high Andean lagoons using multivariate statistical methods in two contrasting climatic periods. J Ecol Eng 19 (6): 24-33. DOI: 10.12911/22998993/92677.
Dang ATN, Reid M, Kumar L. 2022. Assessing potential impacts of sea level rise on mangrove ecosystems in the Mekong Delta, Vietnam. Reg Environ Change 22: 70. DOI: 10.1007/s10113-022-01925-z.
Doelle M, Puthucherril TG. 2021. Nature based solutions to sea level rise and other climate change impacts on oceanic and coastal environments: A law and policy perspective. Nord J Bot 2023 (1): e03051. DOI: 10.1111/njb.03051.
FAO. 1999. The Living Marine Resources of the Western Central Pacific. FAO Species Identification Guide for Fishery Purposes. FAO, Rome.
Ferreira AC, Ashton EC, Ward RD, Hendy I, Lacerda LD. 2024. Mangrove biodiversity and conservation: Setting key functional groups and risks of climate induced functional disruption. Diversity 16 (7): 423. DOI: 10.3390/d16070423.
Friess DA, Adame MF, Adams JB, Lovelock CE. 2022. Mangrove forests under climate change in a 2°C world. WIREs Climate Change 13 (4): e792. DOI: 10.1002/wcc.792.
Hapsari KA, Jennerjahn T, Nugroho SH, Yulianto E, Behling H. 2022. Sea level rise and climate change acting as interactive stressors on development and dynamics of tropical peatlands in coastal Sumatra and South Borneo since the Last Glacial Maximum. Glob Chang Biol 28 (10): 3459-3479. DOI: 10.1111/gcb.16131.
Hatje V, Copertino M, Patire VF, Ovando X, Ogbuka J, Johnson BJ, Kennedy H, Masque P, Creed JC. 2023. Vegetated coastal ecosystems in the Southwestern Atlantic Ocean are an unexploited opportunity for climate change mitigation. Commun Earth Environ 4: 160. DOI: 10.1038/s43247-023-00828-z.
Hui TKL, Lo ICN, Wong KKW, Tsang CTT, Tsang LM. 2024. Metagenomic analysis of gut microbiome illuminates the mechanisms and evolution of lignocellulose degradation in mangrove herbivorous crabs. BMC Microbiol 24 (1): 57. DOI: 10.1186/s12866-024-03209-4.
Hülsen S, Mcdonald RI, Chaplin Kramer R, Bresch DN, Sharp R, Worthington T, Kropf CM. 2023. Global protection from tropical cyclones by coastal ecosystems—past, present, and under climate change. Environ Res Lett 18: 124023. DOI: 10.1088/1748-9326/ad00cd.
Lam-Gordillo O, Baring R, Dittmann S. 2021. Taxonomic and functional patterns of benthic communities in southern temperate tidal flats. Front Mar Sci 8: 723749. DOI: 10.3389/fmars.2021.723749.
Lobo LQ, Izabel‐Shen D, Albertsson J, Raymond C, Gunnarsson JS, Broman E, Nascimento FJ. 2024. Salinity and resource availability as drivers of Baltic benthic fungal diversity. Environmental DNA 6 (1): e526. DOI: 10.1002/edn3.526.
Lovelock CE, Bennion V, de Oliveira M, Hagger V, Hill JW, Kwan V, Pearse AL, Rossini RA, Twomey AJ. 2024. Mangrove ecology guiding the use of mangroves as nature based solutions. J Ecol 112 (11): 2510-2521. DOI: 10.1111/1365-2745.14383.
Mackinney G. 1941. Absorption of light by chlorophyll solutions. J Biol Chem 140 (2): 315-322. DOI: 10.1016/S0021-9258(18)51320-X.
Magurran AE. 2021. Measuring biological diversity. Curr Biol 31 (19): R1174-R1177. DOI: 10.1016/j.cub.2021.07.049.
Meijer KJ, El-Hacen EH, Govers LL, Lavaleye M, Piersma T, Olff H. 2021. Mangrove mudflat connectivity shapes benthic communities in a tropical intertidal system. Ecol Indic 130: 108030. DOI: 10.1016/j.ecolind.2021.108030.
Murdiyarso D, Donato D, Kauffman JB, Kurnianto S, Stidham M, Kanninen M. 2009. Carbon Storage in Mangrove and Peatland Ecosystems: A Preliminary Account from Plots in Indonesia. Working Paper 48. Center for International Forestry Research (CIFOR), Bogor.
Perri S, Detto M, Porporato A, Molini A. 2023. Salinity‑induced limits to mangrove canopy height. Glob Ecol Biogeogr 32 (9): 1561-1574. DOI: 10.1111/geb.13720.
Pielou EC. 1966. The measurement of diversity in different types of biological collections. J Theor Biol 13: 131-144. DOI: 10.1016/0022-5193(66)90013-0.
Qureshi NA, Saher NU. 2024. Burrow morphology of three species of fiddler crab (Uca) along the coast of Pakistan. Belg J Zool 142 (2): 114-126. DOI: 10.26496/bjz.2012.152.
Reed DC, Schmitt RJ, Burd AB, Burkepile DE, Kominoski JS, McGlathery KJ, Miller RJ, Morris JT, Zinnert JC. 2022. Coastal ecosystem responses to climate change: Insights from long term ecological research. Bioscience 72 (9): 871-888. DOI: 10.1093/biosci/biac006.
Rumondang R, Feliatra F, Warningsih T, Yoswati D. 2024. Sustainable management model and ecosystem services of mangroves based on socio ecological system on the coast of Batu Bara Regency, Indonesia. Environ Res Commun 6 (3): 035008. DOI: 10.1088/2515-7620/ad2d01.
Shannon CE. 1948. A mathematical theory of communication. Bell Syst Tech J 27: 379-423. DOI: 10.1002/j.1538-7305.1948.tb01338.x.
Simpson EH. 1949. Measurement of diversity. Nature 163: 688. DOI: 10.1038/163688a0.
Suello RH, Hernandez SL, Bouillon S, Belliard J-P, Dominguez-Granda L, Van de Broek M, Rosado Moncayo AM, Ramos Veliz J, Ramirez KP, Govers G, Temmerman S. 2022. Mangrove sediment organic carbon storage and sources in relation to forest age and position along a deltaic salinity gradient. Biogeosciences 19: 1571-1585. DOI: 10.5194/bg-19-1571-2022.
Syafina HA, Hartoko A, Purnomo PW. 2025. Ecological patterns of nipa palm (Nypa fruticans) in peatland mangroves of Eastern Sumatra. Intl J Agric Environ Res 11 (5): 1376-1395. DOI: 10.51193/IJAER.2025.11501.
Toumi C, Gauthier O, Grall J, Thiébaut É, Boyé A. 2024. Disentangling the effects of space, time, and environmental and anthropogenic drivers on coastal macrobenthic β diversity in contrasting habitats over 15 years. Sci Total Environ 946: 173919. DOI: 10.1016/j.scitotenv.2024.173919.
Vázquez-Rosas-Landa M, Pérez-Ceballos R, Zaldívar-Jiménez A, Hereira S, Pérez González L, Prieto-Davó A, Celis-Hernández O, Canales-Delgadillo JC. 2025. Impact of seasonal flooding and loss of hydrological connectivity on microbial community dynamics in mangrove sediments in the southern Gulf of Mexico. PeerJ 13: e19371. DOI: 10.7717/peerj.19371.
Wan X, Fang Y, Jiang Y, Lu X, Zhu L, Feng J. 2024. Temperature and nutrients alter the relative importance of stochastic and deterministic processes in the coastal macroinvertebrates biodiversity assembly on long-time scales. Ecol Evol 14 (2): e11062. DOI: 10.1002/ece3.11062.
Wu W, Feng X, Wang N, Shao S, Liu M, Si F, Chen L, Jin C, Xu S, Guo Z, Zhong C, Shi S, He Z. 2024. Genomic analysis of Nypa fruticans elucidates its intertidal adaptations and early palm evolution. J Integr Plant Biol 66 (4): 824-843. DOI: 10.1111/jipb.13625.
Xu S, Guo Z, Feng X, Shao S, Yang Y, Li J, Zhong C, He Z, Shi S. 2021. Where whole‑genome duplication is most beneficial: Adaptation of mangroves to a wide salinity range between land and sea. Mol Ecol 32 (2): 460-475. DOI: 10.1111/mec.16320.
Yazdian H, Jaafarzadeh N, Zahraie B. 2014. Relationship between benthic macroinvertebrate bio-indices and physicochemical parameters of water: A tool for water resources managers. J Environ Health Sci Eng 12: 30. DOI: 10.1186/2052-336X-12-30.
Yoshikai M, Nakamura T, Suwa R, Sharma S, Rollon R, Yasuoka J, Egawa R, Nadaoka K. 2022. Predicting mangrove forest dynamics across a soil salinity gradient using an individual‑based vegetation model linked with plant hydraulics. Biogeosciences 19 (6): 1813-1832. DOI: 10.5194/bg‑19‑1813‑2022.