Changes in landscape ecology between nature reserve and palm oil plantation in West Java, Indonesia based on the observations of macrofungal population
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Abstract. Arko PF, Sudirman LI, Qayim I. 2021. Changes in landscape ecology between nature reserve and palm oil plantation in West Java, Indonesia based on the observations of macrofungal population. Biodiversitas 22: 4526-4537. As the biggest tropical country in Southeast Asia with the third-largest forest, Indonesia has limited data on macrofungal diversity. The limitation of the data is due to the lack of study on macrofungi in high biodiversity locations such as Dungus Iwul Nature Reserve (CADI). The purpose of this study was to determine and analyze the population of macrofungal species caused by the conversion in landscape structure (fragmentation and land-use change) that occurred in CADI patch and oil palm plantation of PT Perkebunan Nusantara VIII (PTPN) matrix, Cigelung, West Java. The sampling method used was opportunistic sampling assisted by line intercept. The macrofungal identification was based on morphological characters. The analysis of community ecology was performed in R programme. The results showed that macrofungal population and diversity in CADI were the highest, followed by PTPN planted in 2004 and planted in 2003, with a significant difference among the three study locations. The community dominance index shows the opposite, with the highest in PTPN 2003 and the lowest in CADI. These results showed changes in macrofungal population and diversity from the conversion in landscape structure. There were eleven indicator species in CADI, two species in PTPN 2003, and five species in PTPN 2004.
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References
Arnold E. 1992. The role of macrofungi in environmental conservation. Giom Bot Ital 126: 779-795.
Arora D. 1986. Mushrooms Demystified. Ten Speed Press, California.
Baptista P, Martins A, Tavares RM, Lino-Neto T. 2010. Diversity and fruiting pattern of macrofungi associated with chestnut (Castanea sativa) in the Tra ?s-os-Montesregion (Northeast Portugal). Fungal Ecol 3: 9-19.
BBKSDA Jabar. 2016. CA Dungus Iwul. Balai Besar KSDA Jabar. http://bbksda jabar.dephut.go.id/?q=kawasan/dungusiwul.
Berger WH, Parker FL. 1970. Diversity of Planktonic Foraminifera in Deep-Sea Sediments. Science 168: 1345–1347.
Boddy L, Hiscox J, Gilmartin EC, Johnston SR, Heilmann-Clausen J. 2004. Wood Decay Communities in Angiosperm Wood. In: Dighton J, White JF (eds). The Fungal Community Its Organization and Role in the Ecosystem Fourth Edition. CRC Press, Florida.
Canty A, Ripley BD. 2019. boot: Bootstrap R (S Plus) Functions. R package. https://cran.r project.org/web/packages/bootstrap/ bootstrap.pdf.
Chen H. 2018. Package ‘VennDiagram’. R package. https://cran.r project.org/web/packages/VennDiagram/VennDiagram.pdf.
Davison AC, Hinkley DV. 1997. Bootstrap Methods and Their Applications. Cambridge University Press, Cambridge.
Drábková LZ. 2014. DNA Extraction from Herbarium Specimens. In: Besse P (ed). Molecular Plant Taxonomy: Methods and Protocols, Methods in Molecular Biology. Springer, New York.
Gandjar I, Ariyanti O, Wellyzar S. 2006. Mikologi Dasar dan Terapan. Obor, Jakarta.
Gardener M. 2014. Community Ecology: Analytical Methods Using R and Excel. Pelagic Publishing, Devon.
Gorr WL, Kurland KS. 2017. GIS Tutorial 1: Basic Workbook. ESRI Press, California.
Gotelli NJ, Colwell RK. 2001. Quantifying biodiversity: procedures and pitfalls in measurement and comparison of species richness. Ecol Lett 4: 379–391.
Greenwood JJD, Robinson RA. 2006. General Census Methods. In: Sutherland WJ (ed). Ecological Census Techniques. Cambridge University Press, Cambridge.
Hawksworth DL. 2001. The magnitude of fungal diversity: the 1–5 million species estimate revisited. Mycol Res 105: 1422–1432.
Heck KL, van Belle G, Simberloff D. 1975. Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology 56: 1459–1461.
Henriot A, Cheype J. 2020. Piximètre: La mesure de dimensions sur images. Piximètre. http://www.piximetre.fr/.
Hill MO. 1973. Diversity and evenness: a unifying notation and its consequences. Ecology 54: 427–473.
Hillebrand H, Bennett DM, Cadotte MW. 2008. Consequences of dominance: a review of evenness effects on local and regional ecosystem processes. Ecology. 89: 1510–1520.
Holm S. 1979. A simple sequentially rejective multiple test procedure. Scand J Stat 6: 65-70.
Hothorn T, Everitt BS. 2009. A handbook of statistical analyses using R. CRC Press, London.
Hurlbert SH. 1971. The nonconcept of species diversity: a critique and alternative parameters. Ecology 52: 577–586.
Hutcheson K. 1970. A test for comparing diversities based on the Shannon formula. J Theor Biol 29: 151-154.
James TY, Porter D, Hamrick JL, Vilgalys R. 1999. Evidence for limited intercontinental gene flow in the cosmopolitan mushroom, schizophyllum commune. Evolution. 53: 1665-1677.
Johnson RA, Bhattacharyya GJ. 2010. Statistics: Principles & Methods. Wiley, New Jersey.
Jost L. 2006. Entropy and diversity. Oikos 113: 363-375.
Kindt R, Coe R. 2005. Tree diversity analysis. A manual and software for common statistical methods for ecological and biodiversity studies. World Agroforestry Centre (ICRAF), Nairobi.
Kodra HSA, Syaukani HR. 2004. Bumi makin panas, banjir makin luas: menyibak tragedi kehancuran hutan. Nuansa, Bandung.
Læssøe T. 2013. Mushroom, How to Identify and Gather Wild Mushroom and Other Fungi. DK Publishing, New York.
Laganà A, Salerni E, Barluzzi C, Perini C, De Dominicis V. 2002. Macrofungi as long-term indicators of forest health and management in central Italy. Cryptogam Mycol 23: 39-50.
Largent DL, Johnson D, Watling R. 1997. How to Identify Mushroom to Genus II, Microscopic Features. Mad River Press, California.
Largent DL. 1986. How to Identify Mushroom to Genus I, Macroscopic Features. Mad River Press, California.
Leinster T, Cobbold CA. 2012. Measuring diversity: the importance of species similarity. Ecology 93: 477-489.
Lodge DJ, Ammirati JF, O’Dell TE, Mueller GM. 2004. Collecting and Describing Macrofungi. In: Mueller GM, Bills GF, Foster MS (eds). Biodiversity of Fungi – Inventory and Monitoring Methods. Academic Press, Massachusetts.
Margono BA, Potapov PV, Turubanova S, Stolle F, Hansen MC. 2014. Primary forest cover loss in Indonesia over 2000 2012. Nat Clim Chang 4: 730-735.
Marr CD, Grund DW, Harrison KA. 1986. The taxonomic potential of laccase and tyrosinase spot tests. Mycologia 78: 169–184.
Maurer BA, McGill BJ. 2010. Measurement of species diversity. In: Magurran AE, McGill BJ (eds). Biological Diversity. Oxford University Press, Oxford.
Mueller GM, Schmit JP, Huhndorf SM, Ryvarden L, O’Dell TE, Lodge DJ, Leacock PR, Mata M, Umaña L, Wu Q, et al. 2004. Recommended Protocols for Sampling Macrofungi. In: Mueller GM, Bills GF, Foster MS (eds). Biodiversity of Fungi – Inventory and Monitoring Methods. Academic Press, Massachusetts.
Mycobank. 2020. Basic statistics on MycoBank. MYCOBANK Database. https://www.mycobank.org/page/Stats%20page.
Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D, Minchin PR, O'Hara RB, Simpson GL, Solymos P, et al. 2019. vegan: Community Ecology Package. R package. https://CRAN.Rproject.org/package=vegan.
Oksanen J, Kindt R, Simpson GL. 2018. Package ‘vegan3d’. R package. https://cran.r project.org/web/packages/vegan3d/vegan3d.pdf.
Olson DM, Dinerstein E, Wikramanayake ED, Burgess ND, Powell GVN, Underwood EC, d'Amico JA, Itoua I, Strand HE, Morrison JC, et al. 2001. Terrestrial Ecoregions of the World: A New Map of Life on Earth. BioScience 51: 933 938.
Ostry ME, Anderson NA, O’Brien, JG. 2010. Field Guide to Common Macrofungi in Eastern Forests and Their Ecosystem Functions. United States Department of Agriculture, Pennsylvania.
Prasetyo LB. 2017. Pendekatan Ekologi Lanskap untuk Konservasi Biodiversitas. In: Manaf LA (ed). Pelestarian Pemberdayaan Hutan dan Mikroorganisme serta Pembangunan Pertanian melalui Pendekatan Ekologi dan Teknologi. IPB Press, Bogor.
R Core Team. 2020. R: A language and environment for statistical computing., R Foundation for Statistical Computing, Vienna.
Salerni E, Laganà A, Perini C, Loppi S, De Dominicis V. 2002. Effects of temperature and rainfall on fruiting of macrofungi in oau forests of the Mediterranean area. Isr J Plant Sci 50: 189-198
Seephueak P, Preecha C, Seepheak W. 2017. Diversity of Macrofungi in Oil Palm (Elaeis guineensis Jacq.) Plantation in Southern Thailand. Walailak J Sci & Tech 15: 201-211.
Shuhada SH, Salim S, Nobilly F, Zubaid A, Azhar B. 2017. Logged peat swamp forest supports greater macrofungal biodiversity than large-scale oil palm plantations and smallholdings. Ecol Evol 7: 7187-7200.
Singer R. 1986. The Agaricales in Modern Taxonomy, 4th ed. Koeltz Scientific, Koenigstein.
Smith ME, Bonito GM. 2012. Systematics and Ecology of Edible Ectomycorrhizal Mushrooms. In: Zambonelli A, Bonito GM (eds). Edible Ectomycorrhizal Mushrooms. Springer, Berlin.
Takemoto S, Nakamura H, Erwin, Imamura Y, Shimane T. 2010. Schizophyllum commune as a Ubiquitous Plant Parasite. Jpn Agric Res Q 44: 357–364.
Tampubolon SDBM, Utomo B, Yunasfi. 2011. Keanekaragaman Jamur Makroskopis di Hutan Pendidikan Universitas Sumatera Utara Desa Tongkoh Kabupaten Karo Sumatera Utara. USU Press, Medan.
Terborgh J. 1992. Diversity and the Tropical Rainforest. Scientific American Library, New York.
Tóthmérész B. 1995. Comparison of different methods for diversity ordering. J Veg Sci 6: 283-290.
Wickham H. 2016. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag, New York.
WWF. 2005, 10 Negara dengan Hutan Terbesar. WWF Indonesia. http://www.wwf.or.id/.
Ye L, Li H, Mortimer PE, Xu J, Gui H, Karunarathna SC, Kumar A, Hyde KD, Shi L. 2019. Substrate Preference Determines Macrofungal Biogeography in the Greater Mekong Sub-Region. Forest 10: 1-15.
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