Evaluation of Toraja (Indonesia) local aromatic rice mutant developed using heavy-ion beam irradiation

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DOI https://doi.org/10.13057/biodiv/d220846
Issue
Vol. 22 No. 8 (2021)
Section
Articles

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ANDI MULIARNI OKASA
Graduate School of Agricultural Science, Universitas Hasanuddin. Jl. Perintis Kemerdekaan Km. 10, Makassar 90245, South Sulawesi, Indonesia
RINALDI SJAHRIL ♥
Laboratory of Plant Bioscience and Reproduction Biotechnology, Department of Agronomy, Faculty of Agriculture, Universitas Hasanuddin. Jl. Perintis Kemerdekaan Km. 10, Makassar 90245, South Sulawesi, Indonesia
MUHAMMAD RIADI
Laboratory of Plant Breeding and Seed Science, Department of Agronomy, Faculty of Agriculture, Universitas Hasanuddin. Jl. Perintis Kemerdekaan Km. 10, Makassar 90245, South Sulawesi, Indonesia
META MAHENDRADATTA
Laboratory of Chemical Analysis and Food Quality Control, Department of Agricultural Product Technology, Faculty of Agriculture, Universitas Hasanuddin. Jl. Perintis Kemerdekaan Km. 10, Makassar 90245, South Sulawesi, Indonesia
TADASHI SATO
Laboratory of Environmental Biotechnology, Graduate School of Agricultural Science, Tohoku University. Sendai, Miyagi 980-85727, Japan
KINYA TORIYAMA
Laboratory of Environmental Biotechnology, Graduate School of Agricultural Science, Tohoku University. Sendai, Miyagi 980-85727, Japan
KOTARO ISHII
RIKEN Nishina Center for Accelerator-Based Science. 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
YORIKO HAYASHI
RIKEN Nishina Center for Accelerator-Based Science. 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
TOMOKO ABE
RIKEN Nishina Center for Accelerator-Based Science. 2-1 Hirosawa, Wako, Saitama 351-0198, Japan

Abstract

Abstract. Okasa AM, Sjahril R, Riadi M, Mahendradatta M, Sato T, Toriyama K, Ishii K, Hayashi Y, Abe T. 2021. Evaluation of Toraja (Indonesia) local aromatic rice mutant developed using heavy-ion beam irradiation. Biodiversitas 22: 3474-3481. The aromatic local Toraja rice "Pare Bau" has a good grain quality and aroma. However, it has some disadvantages, including a late heading and low yield for a modern farming system. This study aims to evaluate and select early heading as well as high yield mutant lines induced by heavy-ion beam irradiation. Furthermore, dry seeds of Pare Bau were irradiated with Argon-ion (300 keV/?m) and Carbon-ion (30 keV/?m) at RI-beam factory, RIKEN Nishina Center, Japan. The germination percentages of the M1 seeds were 49% for Pare Bau irradiated with Argon-ion (PB-A), 53% for Pare Bau irradiated with Carbon-ion (PB-C), and 70% for the Control. The 13 PB-A and 13 PB-C M1 plants were selected, and the seeds were sampled in the paddy field of Hasanuddin University (20 m asl.), Makassar. During the following planting season, the M2 generation plant was examined in Enrekang District (650 m asl.), South Sulawesi, Indonesia. Based on the early heading and a larger number of panicles, the 18 PB-A and one PB-C M3 line were selected from a total of 404 M2 survival plants. The selected lines and control were grouped into seven clusters based on the quantitative phenotypic traits, indicating the existence of genetic variability. The plant yield was significantly correlated with plant height, the number of tillers, the number of panicles, as well as grain weight per panicle, which showed that these traits are good criteria for selection.

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References
Abe T, Ryuto H, Fukunishi N (2012). Ion beam radiation mutagenesis. In: Shu QY, Forster BP, Nakagawa H (eds) Plant Mutation Breeding and Biotechnology. CABI, UK.
Anshori MF, Purwoko BS, Dewi IS, Ardie SW, Suwarno WB (2019). Selection index based on multivariate analysis for selecting doubled-haploid rice lines in lowland saline prone area. SABRAO J Breed Genet 51(2): 161-174.
Chen YL, Liang HL, Ma XL, Lou SL, Xie YY, Liu ZL, Chen LT, Liu YG (2013). An Efficient Rice Mutagenesis System Based on Suspension?Cultured Cells. Journal of integrative plant biology 55(2): 122-130.
Fadhli N, Farid M, Rafiuddin, Efendi R, Azrai M, Anshori MF (2020). Multivariate analysis to determine secondary characters in selecting adaptive hybrid corn lines under drought stress. Biodiversitas 21(8): 3617-3624.
Fekih R, Takagi H, Tamiru M, Abe A, Natsume S, Yaegashi H, Sharma S, Sharma S, Kanzaki H, Matsumura H, Saitoh H, Mitsuoka C, Utsushi H, Uemura A, Kanzaki E, Kosugi S, Yoshida K, Cano L, Kamoun S, Terauchi R (2013). MutMap+: genetic mapping and mutant identification without crossing in rice. PloS one 8: e68529.
Franco J, Crossa J, Ribaut JM, Bertran J, Warburton ML and Khairallah M (2001) A method for combining molecular markers and phenotypic attributes for classifying plant genotypes. Theor Appl Genet 103: 944-952.
Fukui K (1983). Sequential occurrence of mutations in a growing rice callus. Theor Appl Genet 65(3): 225-230.
Hayashi M, Crofts N, Oitome NF, Fujita N, 2018. Analyses of starch biosynthetic protein complexes and starch properties from developing mutant rice seeds with minimal starch synthase activities. BMC Plant Biol 18(1): 1-15.
Ichida H, Morita R, Shirakawa Y, Hayashi Y, Abe T (2019). Targeted exome sequencing of unselected heavy-ion beam-irradiated populations reveals less-biase mutation characteristics in the rice genome. The Plant J 98(2): 301-314.
Ichitani K, Yamaguchi D, Taura S, Fukutoku Y, Onoue M, Shimizu K, Hashimoto F, Sakata Y, Sato M (2014). Genetic analysis of ion-beam induced extremely late heading mutants in rice. Breed Sci 64(3): 222-230.
Ishikawa S, Ishimaru Y, Iguraa M, Kuramata M, Abe T, Senoura T, Hase Y, Arao T, Nishizawa NK, Nakanishi H (2012). Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice. Proc Natl Acad Sci USA 109(47): 19166-19171.
Jain SM (2005). Major mutation-assisted plant breeding programs supported by FAO/IAEA. Plant Cell Tiss Org Cult 82(1): 113-123.
Kazama Y, Hirano T, Saito H, Liu Y, Ohbu S, Hayashi Y, Abe T (2011). Characterization of highly efficient heavy-ion mutagenesis in Arabidopsis thaliana. BMC Plant Biol 11(1): 1-10.
Ke C, Guan W, Bu S, Li X, Deng Y, Wei Z, Wu W, Zheng Y (2019). Determination of absorption dose in chemical mutagenesis in plants. PloS one. 14: e0210596.
Khun L H, Miyaji S, Motomura K, Murayama S, Adaniya S, Nose A (2006). Trisomic analysis of new gene for late heading in rice, Oryza sativa L. Euphytica 151(2): 235-241.
Kumar AP, Boualem A, Bhattacharya A, Parikh S, Desai N, Zambelli A, Leon A, Chatterjee M, Bendahmane A (2013). SMART–sunflower mutant population and reverse genetic tool for crop improvement. BMC Plant Biol 13(1): 1-8.
Li R, Li M, Ashraf U, Liu S, Zhang J (2019). Exploring the relationships between yield and yield-related traits for rice varieties released in China from 1978 to 2017. Front Plant Sci 10: 1-12.
Luan W, Chen H, Fu Y, Si H, Peng W, Song S, Liu W, Hu G, Sun Z, Xie D, Sun C (2009). The effect of the crosstalk between photoperiod and temperature on the heading-date in rice. PloS ONE 4: e5891.
Luz VKD, Oliveira VD, Maltzahn LE, Venske E (2020). Mutation breeding for rice grain quality: aspects, considerations, and promising results. In: Oliveira ACD, Pegoraro C, Viana VE (eds) The future of rice Demand: Quality beyond productivity. Springer, Switzerland.
Maulana Z, Kuswinanti T, Sennang NR, Syaiful SA (2014). Genetic diversity of locally rice germplasm from Tana Toraja and Enrekang Based on RAPD (Random Amplified Polymorphism DNA) Markers. Int J Sci Technol Res 3(4): 198-202.
Morita R, Ichida H, Ishii K, Hayashi Y, Abe H, Shirakawa Y, Ichinose K, Tsuneizumi K, Kazama T, Toriyama K, Sato T, Abe T (2019). LONG GRAIN 1: a novel gene that regulates grain length in rice. Mol Breed 39(9): 135-142.
Oladosu Y, Rafii MY, Abdullah N, Abdul Malek M, Rahim HA, Hussin G, Abdul Latif M, Kareem I. Genetic variability and selection criteria in rice mutant lines as revealed by quantitative traits. The Scientific World Journal
Peternelli LA, Moreira EFA, Nascimento M, Cruz CD (2017). Artificial neural networks and linear discriminant analysis in early selection among sugarcane families. Crop Breed. Appl Biotechnol 17(4): 299-305.
Roychowdhury R, Tah J (2013). Mutagenesis-a potential approach for crop improvement. In Hakeem KR, Ahmad P, Ozturk M (eds) Crop Improvement: New Approaches and Modern Techniques. Springer Science+Business Media, New York.
Saito H, Okumoto Y, Teranishi T, Qingbo Y, Nakazaki T, Tanisaka T (2007). Heading time genes responsible for the regional adaptability of 'Tongil-type short-culmed rice cultivars' developed in Korea. Breed Sci 57(2): 135-143.
Sakamoto T, Matsuoka M (2008). Identifying and exploiting grain yield genes in rice. Curr Opin Plant Biol 11(2): 209-214.
Sava FA, Popa RI (2011) Personality types based on the big five model. A cluster analysis over the Romanian population. Cognition, Brain, Behavior. An Interdisciplinary J 15(3): 359-384
Sjahril R, Trisnawaty, Riadi M, Rafiuddin, Sato T, Toriyama K, Hayashi Y, Abe T (2020). Selection of early maturing and high yielding mutants of toraja local red rice grown from M2-M3 population after ion beam irradiation. Hayati J Biosci 27(2): 166-173.
Takhahashi (1984). Differentiation of ecotypes in cultivated rice. In Tsunoda S, Takhahashi N (eds) Biology of Rice. Japan Scientific Societies Press, Tokyo.
Talebi AB, Talebi AB, Shahrokhifar B (2012). Ethyl methane sulphonate (EMS) induced mutagenesis in Malaysian rice (cv. MR219) for lethal dose determination. American J Plant Sci 3(12): 1-5.
Tsai KH (1976). Studies on earliness genes in rice, with special reference to analysis of isoalleles at the E locus. Jpn J Genet 51(2): 115-128.
Vergara BS, Chang TT (1985). The flowering response of the rice plant to photoperiod: A review of the literature (4th eds). International Rice Research Institute, Philippines.
Ward JH (1963). Hierarchical grouping to optimize an objective function. J American Stat Assoc 58(301): 236–244.
Wei XJ, Xu JF, Guo HN, Jiang L, Chen SH, Yu CY, Zhou ZL, Hu PS, Zhai HQ, Wan JM (2010). DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously. Plant Physiol 153(4): 1747–1758.
Xue WY, Xing YZ, Weng XY, Zhao Y, Tang WJ, Wang L, Zhou HJ, Yu SB, Xu CG, Li XH, Zhang QF (2008). Natural variation in ghd7 is an important regulator of heading date and yield potential in rice. Nat Genet 40(6): 761-767.
Yamaguchi H, Hase Y, Tanaka A, Shikazono N, Degi K, Shimizu A, Morishita T (2009). Mutagenic effects of ion beam irradiation in rice. Breed Sci 59(2): 169-177.
Yang D, Cheng C, Zheng X, Ye X, Ye N, Huang F (2020). Identification and fine mapping of a major QTL, qHD19, that plays pleiotropic roles in regulating the heading date in rice. Mol Breed 40(3): 30-41.
Zhang SW, Li CH, Cao J, Zhang YC, Zhang SQ, Xia YF, Sun DY, Sun Y (2009). Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation. Plant Physiol 151(4): 1889-1901.
Zheng Y, Li S, Huang J, FU H, Zhou L, Furusawa Y, Shu Q (2020). Mutagenic effect of three ion beams on rice and identi?cation of heritable mutations by whole genome sequencing. Plants 9(5): 551-567.