Metabolomic profiling and antifungal potential of turmeric (Curcuma longa) root exudate against Ganoderma boninense

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LIDYA KARLINA
SUWANDI SUWANDI
RAHMAD FADLI
A. MUSLIM
HARMAN HAMIDSON
CHANDRA IRSAN

Abstract

Abstract. Karlina L, Suwandi S, Fadli R, Muslim A, Hamidson H, Irsan C. 2025. Metabolomic profiling and antifungal potential of turmeric (Curcuma longa) root exudate against Ganoderma boninense. Biodiversitas 26: 3600-3609. Ganoderma boninense, the causative agent of basal stem rot, significantly threatens oil palm cultivation. Turmeric (Curcuma longa) is a potential source of antifungal compounds for agricultural applications. This study investigates the antifungal properties of root exudates from four turmeric ecotypes (Palembang, Bandung, Surabaya, and Bangka) against Ganoderma boninense and employs untargeted metabolomics using LC-HRMS. The root exudates were collected from two-month-old plants grown in soil by incubating the roots in aerated sterile distilled water for 12 hours. The exudates were then filter-sterilized and directly used for antifungal assays and metabolomic analysis. The results revealed that turmeric root exudates at concentrations of 1.25%, 5%, and 20% inhibited G. boninense growth in a concentration-dependent manner, with the efficacy varying depending on turmeric ecotypes. The Palembang ecotype exhibited the strongest antifungal activity, with inhibition rates of 37.7% to 46.7%. The Bandung and Surabaya ecotypes showed moderate inhibition (10.3-36.2%), while the Bangka ecotype had weak effects. None of the turmeric exudates at concentrations between 1.25% and 20% promoted the growth of G. boninense. Metabolomic profiling played a crucial role in this study, identifying 193 metabolites, with 20 significant differentially accumulated metabolites in the inhibitory exudate group. Key metabolites such as azelaic acid, bis(2-ethylhexyl) phthalate, haplofungin C, menthyl acetate, and piptamine were identified, shedding light on their potential contribution to antifungal activity. These findings indicate that turmeric root exudates contain bioactive compounds that could be explored as eco-friendly biocontrol agents against G. boninense.

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Akter J, Hossain MA, Sano A, Takara K, Islam MZ, Hou D-X. 2018. Antifungal activity of various species and strains of turmeric (Curcuma spp.) against (Fusarium solani) sensu lato. Pharm Chem J 52: 320-325. DOI: 10.1007/s11094-018-1815-4.

Akter J, Islam MZ, Takara K, Hossain MA, Sano A. 2019. Isolation and structural elucidation of antifungal compounds from Ryudai gold (Curcuma longa) against Fusarium solani sensu lato isolated from American manatee. Comp Biochem Physiol C Toxicol Pharmacol 219: 87-94. DOI: 10.1016/j.cbpc.2019.02.011.

Chen C, Long L, Zhang F, Chen Q, Chen C, Yu X, Liu Q, Bao J, Long Z. 2018. Antifungal activity, main active components and mechanism of Curcuma longa extract against Fusarium graminearum. PLoS One 13 (3): e0194284. DOI: 10.1371/journal.pone.0194284.

de Souza LP, Alseekh S, Scossa F, Fernie AR. 2021. Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nat Methods 18: 733-746. DOI: 10.1038/s41592-021-01116-4.

Dissanayake SM, Palihakkara IR. 2024. Effects of intercropping of immature oil palm (Elaeis guineensis) with banana, ginger, and turmeric in the Galle District, Sri Lanka. Environ Qual Manag 33 (4): 31-36. DOI: 10.1002/tqem.21980.

Farha AK, Yang Q-Q, Kim G, Zhang D, Mavumengwana V, Habimana O, Li H-B, Corke H, Gan R-Y. 2020. Inhibition of multidrug-resistant foodborne Staphylococcus aureus biofilms by a natural terpenoid (+)-nootkatone and related molecular mechanism. Food Control 112: 107154. DOI: 10.1016/j.foodcont.2020.107154.

Fracchia F, Guinet F, Engle NL, Tschaplinski TJ, Veneault-Fourrey C, Deveau A. 2024. Microbial colonisation rewires the composition and content of poplar root exudates, root and shoot metabolomes. Microbiome 12 (1): 173. DOI: 10.1186/s40168-024-01888-9.

García-Latorre C, Rodrigo S, Santamaria O. 2024. Evaluation of the extract of Pseudopithomyces chartarum to be used as biocontrol agent against Phytophthora cinnamomic in Lupinus luteus. J Soil Sci Plant Nutr 24: 6325-6337. DOI: 10.1007/s42729-024-01969-6.

Gu M, Jin J, Lu P, Yu S, Su H, Shang H, Yang Z, Zhang J, Cao P, Tao J. 2024. Regulation of root-associated microbiomes and root exudates by different tobacco species. Chem Biol Technol Agric 11: 151. DOI: 10.1186/s40538-024-00678-7.

Hussien AM, Abbas MS. 2023. Effect of allelopathic potential of some plants root exudates concerning growth and pathogenicity of some fungus on Brassica oleracea varplant. IOP Conf Ser: Earth Environ Sci 1158: 072006. DOI: 10.1088/1755-1315/1158/7/072006.

Ibrahim MS, Seman IA, Rusli MH, Izzuddin MA, Kamarudin N, Hashim K, Abd Manaf Z. 2020. Surveillance of Ganoderma disease in oil palm planted by participants of the smallholders replanting incentive scheme in Malaysia. J Oil Palm Res 32 (2): 237-244. DOI: 10.21894/jopr.2020.0024.

Kamu A, Phin CK, Seman IA, Gabda D, Mun HC. 2021. Estimating the yield loss of oil palm due to Ganoderma basal stem rot disease by using Bayesian model averaging. J Oil Palm Res 33 (1): 46-55. DOI: 10.21894/jopr.2020.0061.

Khoo YW, Chong KP. 2023. Ganoderma boninense: General characteristics of pathogenicity and methods of control. Front Plant Sci 14: 1156869. DOI: 10.3389/fpls.2023.1156869.

Li C, Tian Q, u Rahman MK, Wu F. 2020. Effect of antifungal compound phytosphingosine in wheat root exudates on the rhizosphere soil microbial community of watermelon. Plant Soil 456: 223-240. DOI: 10.1007/s11104-020-04702-1.

Li J, Li Z, Duan Y, Liu C, Yan M. 2024. Secondary metabolites of Fomitopsis betulina: Chemical structures, biological activity and application prospects. J Fungi 10 (9): 616. DOI: 10.3390/jof10090616.

Lima GS, Lima NM, Roque JV, de Aguiar DVA, Oliveira JVA, dos Santos GF, Chaves AR, Vaz BG. 2022. LC-HRMS/MS-based metabolomics approaches applied to the detection of antifungal compounds and a metabolic dynamic assessment of Orchidaceae. Molecules 27 (22): 7937. DOI: 10.3390/molecules27227937.

Lotfy MM, Hassan HM, Hetta MH, El-Gendy AO, Mohammed R. 2018. Di-(2-ethylhexyl) phthalate, a major bioactive metabolite with antimicrobial and cytotoxic activity isolated from River Nile derived fungus Aspergillus awamori. Beni Suef Univ J Basic Appl Sci 7 (3): 263-269. DOI: 10.1016/j.bjbas.2018.02.002.

Masrukhin M, Putri AL, Sulistiyani TR, Ilyas M, Purnaningsih I, Saskiawan I, Niam MY. 2021. Antifungal activity of bacterial isolates from straw mushroom cultivation medium against phytopathogenic fungi. J Trop Biodivers Biotechnol 6 (1): jtbb59235. DOI: 10.22146/jtbb.59235.

Ohnuki T, Yano T, Ono Y, Kozuma S, Suzuki T, Ogawa Y, Takatsu T. 2009. Haplofungins, novel inositol phosphorylceramide synthase inhibitors, from Lauriomyces bellulus SANK 26899 I. Taxonomy, fermentation, isolation and biological activities. J Antibiot 62 (10): 545-549. DOI: 10.1038/ja.2009.72.

Ortiz A, Sansinenea E. 2018. Di-2-ethylhexylphthalate may be a natural product, rather than a pollutant. J Chem 2018 (1): 6040814. DOI: 10.1155/2018/6040814.

Pang Z, Lu Y, Zhou G, Hui F, Xu L, Viau C, Spigelman AF, MacDonald PE, Wishart DS, Li S, Xia J. 2024. MetaboAnalyst 6.0: Towards a unified platform for metabolomics data processing, analysis and interpretation. Nucleic Acids Res 52 (W1): W398-W406. DOI: 10.1093/nar/gkae253.

Peng S, Shu F, Lu Y, Fan D, Zheng D, Yuan G. 2024. Quasi-targeted metabolomics revealed isoliquiritigenin and lauric acid associated with resistance to tobacco black shank. Plant Signal Behav 19 (1): 2332019. DOI: 10.1080/15592324.2024.2332019.

Pinneh EC, Mina JG, Stark MJR, Lindell SD, Luemmen P, Knight MR, Steel PG, Denny PW. 2019. The identification of small molecule inhibitors of the plant inositol phosphorylceramide synthase which demonstrate herbicidal activity. Sci Rep 9 (1): 8083. DOI: 10.1038/s41598-019-44544-1.

Priwiratama H, Prasetyo AE, Susanto A. 2020. Incidence of basal stem rot disease of oil palm in converted planting areas and control treatments. IOP Conf Ser: Earth Environ Sci 468: 012036. DOI: 10.1088/1755-1315/468/1/012036.

Rahmadhani TP, Suwandi S, Pujiastuti Y. 2018. Growth response of Ganoderma sp. mycelium treated with root exudates of herbaceous plants. Biovalentia: Biol Res J 4: 28-31. DOI: 10.24233/biov.4.1.2018.88.

Salem MA, Wang JY, Al-Babili S. 2022. Metabolomics of plant root exudates: From sample preparation to data analysis. Front Plant Sci 13: 1062982. DOI: 10.3389/fpls.2022.1062982.

Soliman SA, Hafez EE, Al-Kolaibe AMG, Abdel Razik E-SS, Abd-Ellatif S, Ibrahim AA, Kabeil SSA, Elshafie HS. 2022a. Biochemical characterization, antifungal activity, and relative gene expression of two mentha essential oils controlling Fusarium oxysporum, the causal agent of Lycopersicon esculentum root rot. Plants 11:189. DOI: 10.3390/plants11020189.

Soliman SA, Khaleil MM, Metwally RA. 2022b. Evaluation of the antifungal activity of Bacillus amyloliquefaciens and B. velezensis and characterization of the bioactive secondary metabolites produced against plant pathogenic fungi. Biology 11 (10): 1390. DOI: 10.3390/biology11101390.

Spaggiari C, Annunziato G, Spadini C, Montanaro SL, Iannarelli M, Cabassi CS, Costantino G. 2023. Extraction and quantification of azelaic acid from different wheat samples (Triticum durum Desf.) and evaluation of their antimicrobial and antioxidant activities. Molecules 28 (5): 2134. DOI: 10.3390/molecules28052134.

Sun J, Yang J, Zhao S, Yu Q, Weng L, Xiao C. 2023. Root exudates influence rhizosphere fungi and thereby synergistically regulate Panax ginseng yield and quality. Front Microbiol 14: 1194224. DOI: 10.3389/fmicb.2023.1194224.

Suwandi S, Alesia M, Munandar RP, Fadli R, Suparman S, Irsan C, Muslim A. 2024. The suppression of Ganoderma boninense on oil palm under mixed planting with taro plants. Biodiversitas 25 (3): 1143-1150. DOI: 10.13057/biodiv/d250329.

Suwandi S, Irsan C, Muslim A, Herlinda S. 2020. Protection of chili pepper from mosaic virus disease and Aphis gossypii by a fermented water extract of compost. IOP Conf Ser: Earth Environ Sci 468: 012043. DOI: 10.1088/1755-1315/468/1/012043.

Suwandi S, Munandar RP, Suparman S, Irsan C, Muslim A. 2023. Mixed planting with rhizomatous plants interferes with Ganoderma disease in oil palm. J Oil Palm Res 35: 354-364. DOI: 10.21894/jopr.2022.0043.

Suwandi S, Rahmadhani TP, Suparman S, Irsan C, Muslim A. 2022. Allelopathic potential of root exudates from perennial herbaceous plants against Ganoderma boninense. IOP Conf Ser: Earth Environ Sci 976: 012053. DOI: 10.1088/1755-1315/976/1/012053.

Triastuti A, Vansteelandt M, Barakat F, Amasifuen C, Jargeat P, Haddad M. 2023. Untargeted metabolomics to evaluate antifungal mechanism: A study of Cophinforma mamane and Candida albicans interaction. Nat Prod Bioprospect 13 (1): 1. DOI: 10.1007/s13659-022-00365-w.

Upasani ML, Gurjar GS, Kadoo NY, Gupta VS. 2016. Dynamics of colonization and expression of pathogenicity related genes in Fusarium oxysporum f.sp. ciceri during chickpea vascular wilt disease progression. PLoS One 11 (5): e0156490. DOI: 10.1371/journal.pone.0156490.

Virdiana I, Forster BP, Zakaria L. 2024. Basal stem rot of oil palm: Disease development in mineral and peat soils. IOP Conf Ser: Earth Environ Sci 1308: 012025. DOI: 10.1088/1755-1315/1308/1/012025.

Were E, Schöne J, Viljoen A, Rasche F. 2022. Phenolics mediate suppression of Fusarium oxysporum f. sp. cubense TR4 by legume root exudates. Rhizosphere 21: 100459. DOI: 10.1016/j.rhisph.2021.100459.

Wu J, Zhou J, Yang C, Kuang Y, Qi C, Guo F, Zhao Q. 2025. The composition of root exudates between resistant and susceptible konjac species against soft rot disease. J Plant Dis Prot 132: 83. DOI: 10.1007/s41348-025-01073-6.

Xiang Y, Javed Q, Wu Y, Bo Y, Dai Z, Huang P, Sun J, Du D. 2023. Root exudates of Wedelia trilobata suppress soil-borne pathogenic fungi and increase its invasion. Pol J Environ Stud 32 (5): 4865-4875. DOI: 10.15244/pjoes/168421.

Xu S, Bai C, Chen Y, Yu L, Wu W, Hu K. 2024. Comparing univariate filtration preceding and succeeding PLS-DA analysis on the differential variables/metabolites identified from untargeted LC-MS metabolomics data. Anal Chim Acta 1287: 342103. DOI: 10.1016/j.aca.2023.342103.

Yamaguchi T. 2019. Antibacterial properties of nootkatone against gram-positive bacteria. Nat Prod Commun 14 (6): 1-5. DOI: 10.1177/1934578X19859999.

Zakaria L. 2023. Basal stem rot of oil palm: The pathogen, disease incidence, and control methods. Plant Dis 107 (3): 603-615. DOI: 10.1094/pdis-02-22-0358-fe.

Zeng J, Liu J, Lu C, Ou X, Luo K, Li C, He M, Zhang H, Yan H. 2020. Intercropping with turmeric or ginger reduce the continuous cropping obstacles that affect Pogostemon cablin (patchouli). Front Microbiol 11: 579719. DOI: 10.3389/fmicb.2020.579719.

Zhang C, Feng C, Zheng Y, Wang J, Wang F. 2020. Root exudates metabolic profiling suggests distinct defense mechanisms between resistant and susceptible tobacco cultivars against black shank disease. Front Plant Sci 11: 559775. DOI: 10.3389/fpls.2020.559775.

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